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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4954683_4955448_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4954683 - 4955448
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACAGAT
5'SS Class:
major
3'SS Sequence:
TTCTACATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTTACAA
Flanking Amino Acid:
KMLCQMDNHLACVNCVRWSN
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.1
35.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.3
0.7
0.8
78.1
34.6
Minor 5ss
37.6
-1.4
3.5
55.7
48.5
Minor BPS
60.6
0.33
1.7
71.75
40.6

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165