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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4955540_4956003_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4955540 - 4956003
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
CTATTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TCTATTTTAATT
Flanking Amino Acid:
DKLIMVWKRAAYIGPSTVFG
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.4
63.6
48.1
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
70
0.45
1
71.3
38.4
Minor 5ss
43.9
-0.7
2.8
53.3
43.9
Minor BPS
69.9
0.7
1.2
79.53
37.3

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165