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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4956099_4956810_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4956099 - 4956810
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTCCAAACA
Flanking Amino Acid:
CVSILRSHSGDVMDVAWSPH
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
38.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.5
0.48
1
67.2
38.3
Minor 5ss
39.1
-1.2
2.8
40.9
45.4
Minor BPS
54.8
0.15
2
72.44
39.4

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165