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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4958266_4959175_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4958266 - 4959175
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGAG
5'SS Class:
major
3'SS Sequence:
TTTATTTCATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTTTTGATT
Flanking Amino Acid:
ETSITKPFDECGGTTHVLRL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.1
65.3
40.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.4
0.73
0.9
82.5
33.8
Minor 5ss
31
-2.2
3.3
40.3
45.8
Minor BPS
71.4
0.75
1.1
82.67
32.4

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165