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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4959344_4959855_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4959344 - 4959855
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGGGTGAA
5'SS Class:
major
3'SS Sequence:
CTCACTTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTACTGTAATA
Flanking Amino Acid:
VGHRKAVTVVKFNPKIFKKK
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
66.4
34.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
74.4
0.55
0.9
72.2
37.7
Minor 5ss
25.3
-2.8
3.2
27.1
39.3
Minor BPS
55
0.15
2
70.07
36.6

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165