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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4966567_4966913_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4966567 - 4966913
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
GTCTTTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAAGAAAT
Flanking Amino Acid:
TPLCIAQLDTGDFSTAFFNS
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.4
41.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.7
0.51
0.9
72.7
37.5
Minor 5ss
49.5
-0
2.4
58.1
46.5
Minor BPS
43.7
-0.3
2.3
72.91
43

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165