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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4967109_4968560_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4967109 - 4968560
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTATT
5'SS Class:
major
3'SS Sequence:
CTTTTATTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTCAATC
Flanking Amino Acid:
KPTDDAANKDGVNATSASAA
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
81.8
38.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.7
0.67
1
76.4
36.7
Minor 5ss
36.6
-1.5
2.8
44.1
43.1
Minor BPS
60.7
0.32
1.5
71.41
33.8

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165