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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4968732_4970085_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4968732 - 4970085
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
GCTACATAAAAT
Flanking Amino Acid:
VTNTNQTVVDRLKDQNLIKD
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
87.4
0.84
0.8
88.2
29.1
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
46.3
-0.2
2
64.19
45.3

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165