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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4970907_4971650_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4970907 - 4971650
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAGAAGT
Flanking Amino Acid:
PIPQKSFTLQVSSDPSMYLE
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
48.7
-0
2.2
79.51
41.8

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165