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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4976600_4977376_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4976600 - 4977376
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGCACT
5'SS Class:
major
3'SS Sequence:
TTTGGCTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GACATGTTAATT
Flanking Amino Acid:
PLAVIQGRTSNSGRQAARLF
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
70.8
39.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.2
0.66
0.9
73.7
36.9
Minor 5ss
49.8
-0
2.4
67.6
37.1
Minor BPS
47.7
-0.1
2
61.9
42.4

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165