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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4978326_4978915_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4978326 - 4978915
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
AGSQWESTVMGLRKRELLKE
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
HIRA
Ensembl Gene ID:
ENSAPLG00000004150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004347
4953868 - 4979032
25165