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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5000264_5008664_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5000264 - 5008664
Intron Length:
8401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
FTRQDIVTLQDPTNLDKFNV
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
PPIL2
Ensembl Gene ID:
ENSAPLG00000005026
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005259
4994699 - 5051805
57107