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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5008741_5010096_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5008741 - 5010096
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTTCTGAATG
Flanking Amino Acid:
VKNNIKIIDPDEEKAKLDPS
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.3
0.61
0.9
73.4
36.2
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
66.4
0.38
1.5
69.18
38.2

Associated Gene:

Gene:
PPIL2
Ensembl Gene ID:
ENSAPLG00000005026
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005259
4994699 - 5051805
57107