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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5011915_5013134_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5011915 - 5013134
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGAA
5'SS Class:
major
3'SS Sequence:
TGCATTGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTTTGCATT
Flanking Amino Acid:
AMVPETTHEAAAIDEDVVRY
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
62.4
38.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.9
0.56
1
67.9
42.3
Minor 5ss
34.2
-1.8
3.6
47
48.4
Minor BPS
54.5
0.22
1.9
79.72
37

Associated Gene:

Gene:
PPIL2
Ensembl Gene ID:
ENSAPLG00000005026
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005259
4994699 - 5051805
57107