About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5037179_5039821_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5037179 - 5039821
Intron Length:
2643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTATTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATGTCTTTATTC
Flanking Amino Acid:
NSGPNTNKSQFFITFRSCAY
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.5
38.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.5
0.87
0.7
81.2
36.2
Minor 5ss
40
-1.1
2.9
57.4
41.1
Minor BPS
61.9
0.35
1.6
68.12
38.2

Associated Gene:

Gene:
PPIL2
Ensembl Gene ID:
ENSAPLG00000005026
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005259
4994699 - 5051805
57107