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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5039879_5048965_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5039879 - 5048965
Intron Length:
9087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TGTATTGTGACA
Flanking Amino Acid:
YLDKKHTVFGRVVGGFETLT
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.8
32.3
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
86.4
0.82
0.6
85.3
22
Minor 5ss
30.9
-2.2
3.3
40
46.1
Minor BPS
47.6
-0.1
2
62.83
37.5

Associated Gene:

Gene:
PPIL2
Ensembl Gene ID:
ENSAPLG00000005026
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005259
4994699 - 5051805
57107