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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5049039_5049186_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5049039 - 5049186
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTGTTCTTCACT
Flanking Amino Acid:
ESDPKTDRPKEEIRIQSTTV
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
76.2
39.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
83.8
0.76
0.7
76.5
32.1
Minor 5ss
41.8
-0.9
3.2
57.8
46.8
Minor BPS
71.2
0.75
1.7
87.1
39

Associated Gene:

Gene:
PPIL2
Ensembl Gene ID:
ENSAPLG00000005026
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005259
4994699 - 5051805
57107