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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5049929_5051711_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5049929 - 5051711
Intron Length:
1783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
ATTTTGGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTCATTT
Flanking Amino Acid:
GIGKYINMAAAKRSVEDDGP
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
66.7
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
75.9
0.58
1
66.4
44.6
Minor 5ss
42.4
-0.8
2.7
49.6
39.8
Minor BPS
50.3
0.09
1.8
70.99
41.1

Associated Gene:

Gene:
PPIL2
Ensembl Gene ID:
ENSAPLG00000005026
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005259
4994699 - 5051805
57107