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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5074773_5075844_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5074773 - 5075844
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TATTTCTTGATT
Flanking Amino Acid:
NCKTTLGWKYEHAFESSQKY
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80
34.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
88.2
0.86
0.6
81.7
30.3
Minor 5ss
43.5
-0.7
3
62.3
42.4
Minor BPS
77.9
0.96
1
87.31
31.7

Associated Gene:

Gene:
YPEL1
Ensembl Gene ID:
ENSAPLG00000026762
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041370
5074683 - 5087945
13263