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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5075954_5077395_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5075954 - 5077395
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CCCCATCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TCTTCCCCATCC
Flanking Amino Acid:
SQGRAYLFNSVVNVGCGPAE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
66.8
0.38
0.8
57
33.1
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
48.8
-0.1
2.1
67.45
43.9

Associated Gene:

Gene:
YPEL1
Ensembl Gene ID:
ENSAPLG00000026762
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041370
5074683 - 5087945
13263