Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5077440_5087828_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5077440 - 5087828

Intron Length:

10389

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGAAATGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTTTTTTGAAAT

Flanking Amino Acid:

LANHDELISKSFQGSQGRAY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.1

1.16

0.7

90.4

25.2

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

74.1

0.54

41.6

Minor 5ss

24.1

-3

40.6

45.6

Minor BPS

67.7

0.64

1.5

85.71

33.9

Associated Gene:

Gene:

YPEL1

Ensembl Gene ID:

ENSAPLG00000026762

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041370

5074683 - 5087945

13263