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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5119657_5121495_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5119657 - 5121495
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TTGTTCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GAATATTAAACT
Flanking Amino Acid:
NRLFPNADPKALDLLDKMLT
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.6
0.71
0.7
81.3
30.7
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
50.7
0.1
1.8
67.94
42.4

Associated Gene:

Gene:
MAPK1
Ensembl Gene ID:
ENSAPLG00000006116
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006355
5114645 - 5148604
33960