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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5122541_5124599_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5122541 - 5124599
Intron Length:
2059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTGCTTTACTT
Flanking Amino Acid:
RAPEIMLNSKGYTKSIDIWS
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
80.5
0.69
0.9
73.8
35.8
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
65.3
0.56
1.7
82.98
39.3

Associated Gene:

Gene:
MAPK1
Ensembl Gene ID:
ENSAPLG00000006116
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006355
5114645 - 5148604
33960