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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5124717_5129681_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5124717 - 5129681
Intron Length:
4965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTAAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCCTTTTTAATT
Flanking Amino Acid:
LLLNTTCDLKICDFGLARVA
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.6
37.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
59.8
0.22
1.1
54
44.5
Minor 5ss
28.4
-2.5
2.9
33
41.8
Minor BPS
71.7
0.76
1.2
78.3
39.3

Associated Gene:

Gene:
MAPK1
Ensembl Gene ID:
ENSAPLG00000006116
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006355
5114645 - 5148604
33960