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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5129872_5131508_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
5129872 - 5131508
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TGATGCCTTACAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GCTGCCTTACAT
Flanking Amino Acid:
RAPTIEQMKDVYIVQDLMET
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.6
-0
1.3
55.3
44.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
73.6
0.53
1
65.5
40.9
Minor 5ss
96.7
1.57
0.7
90.9
28.7
Minor BPS
53.1
0.18
1.9
69.63
46.9

Associated Gene:

Gene:
MAPK1
Ensembl Gene ID:
ENSAPLG00000006116
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006355
5114645 - 5148604
33960