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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5131692_5148205_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5131692 - 5148205
Intron Length:
16514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTAAAAAT
Flanking Amino Acid:
YIGEGAYGMVCSAYDNVNKV
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.8
0.72
0.8
74.3
36.1
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
49.7
0.06
2
74.97
41.5

Associated Gene:

Gene:
MAPK1
Ensembl Gene ID:
ENSAPLG00000006116
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006355
5114645 - 5148604
33960