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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5175255_5176431_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5175255 - 5176431
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTGCTTTGATC
Flanking Amino Acid:
NGTLAVSRAIGDVCQKPYIS
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
79.6
29.4
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
73.8
0.54
0.9
73
37.1
Minor 5ss
41.7
-0.9
3.1
53.2
45
Minor BPS
69.6
0.6
1.3
76.89
33.8

Associated Gene:

Gene:
PPM1F
Ensembl Gene ID:
ENSAPLG00000006074
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006305
5174881 - 5191743
16863