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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5176526_5177482_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5176526 - 5177482
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTGTATTCTACT
Flanking Amino Acid:
LMEPHKPEREDERARIEALG
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
83.2
0.75
0.8
80.5
36.8
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
48.7
-0
2
73.14
43.6

Associated Gene:

Gene:
PPM1F
Ensembl Gene ID:
ENSAPLG00000006074
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006305
5174881 - 5191743
16863