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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5177627_5178488_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5177627 - 5178488
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTCACCTCACAC
Flanking Amino Acid:
EMFLSKAKRERLRSGTTGVS
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
86.2
0.81
0.7
80.9
30.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
47.3
-0.2
2
60.73
44.1

Associated Gene:

Gene:
PPM1F
Ensembl Gene ID:
ENSAPLG00000006074
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006305
5174881 - 5191743
16863