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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5178678_5179323_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5178678 - 5179323
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CTCCCCACAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTCCCCACAAAA
Flanking Amino Acid:
PEFNQLFGLSDDIDRAYFAV
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
53.2
0.07
1
53.4
28.3
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
45.2
-0.3
1.9
55.61
42.7

Associated Gene:

Gene:
PPM1F
Ensembl Gene ID:
ENSAPLG00000006074
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006305
5174881 - 5191743
16863