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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5179524_5183150_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5179524 - 5183150
Intron Length:
3627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTGTGCTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CACATCTTATTG
Flanking Amino Acid:
EEEGDEERLTLLDGESLQRC
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
74.6
0.55
1
73.5
41.8
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
46.4
-0.4
1.7
44.15
42.3

Associated Gene:

Gene:
PPM1F
Ensembl Gene ID:
ENSAPLG00000006074
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006305
5174881 - 5191743
16863