About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5183282_5191567_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5183282 - 5191567
Intron Length:
8286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTTTTCTTACCA
Flanking Amino Acid:
AEPARSLLGGRGFSPLLAAS
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
75.5
0.57
0.9
71.6
33.1
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
69.9
0.62
1.6
78.35
38.8

Associated Gene:

Gene:
PPM1F
Ensembl Gene ID:
ENSAPLG00000006074
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006305
5174881 - 5191743
16863