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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5195532_5196531_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5195532 - 5196531
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGCC
5'SS Class:
major
3'SS Sequence:
CATGTGCACATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTCCTTCCATG
Flanking Amino Acid:
GQGRRQGRGRADPSDQVQFV
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.2
35.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
57.4
0.17
1
50.4
38.2
Minor 5ss
29.8
-2.3
3.6
41.8
45.1
Minor BPS
47.9
-0.3
2
60.73
41.8

Associated Gene:

Gene:
TOP3B
Ensembl Gene ID:
ENSAPLG00000005306
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047638
5194199 - 5211210
17012