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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5198323_5198577_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5198323 - 5198577
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
ATGTTCTGGAGA
Flanking Amino Acid:
KCHRFMKYIQAKPSRLHCSH
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
48.7
-0.1
1.8
60.43
39.7

Associated Gene:

Gene:
TOP3B
Ensembl Gene ID:
ENSAPLG00000005306
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047638
5194199 - 5211210
17012
ENSAPLT00000005558
5196391 - 5211272
14882