Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5199696_5200470_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5199696 - 5200470

Intron Length:

775

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGAACT

5'SS Class:

major

3'SS Sequence:

CTTTGCATGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

AAAGCTTTGATG

Flanking Amino Acid:

LITLMEKHGIGTDASIPVHI

Intron Amino Acid Position:

509

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

72.6

36.3

Major BPS

0.85

0.9

39.9

Major PPT

70.7

0.47

66.2

39.5

Minor 5ss

42.3

-0.8

2.8

42.3

Minor BPS

49.8

-0.1

1.4

49.57

38.7

Associated Gene:

Gene:

TOP3B

Ensembl Gene ID:

ENSAPLG00000005306

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047638

5194199 - 5211210

17012

ENSAPLT00000005558

5196391 - 5211272

14882