Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5200645_5201407_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5200645 - 5201407

Intron Length:

763

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACTA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTACCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

CTTTGTTTACCT

Flanking Amino Acid:

TCIGKLVTSPGFTEIMPWHS

Intron Amino Acid Position:

451

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

80.8

33.7

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

80.3

0.68

0.9

71.1

39.9

Minor 5ss

35.5

-1.6

3.2

47.7

Minor BPS

57.1

0.3

2.1

78.9

Associated Gene:

Gene:

TOP3B

Ensembl Gene ID:

ENSAPLG00000005306

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047638

5194199 - 5211210

17012

ENSAPLT00000005558

5196391 - 5211272

14882