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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5203283_5204190_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5203283 - 5204190
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
TACTATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTTACTGGAAA
Flanking Amino Acid:
NITKMAKEAKVESVSKKEKV
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
77.4
0.62
0.9
69.7
41
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
55.6
0.17
1.8
73.81
37

Associated Gene:

Gene:
TOP3B
Ensembl Gene ID:
ENSAPLG00000005306
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047638
5194199 - 5211210
17012
ENSAPLT00000005558
5196391 - 5211272
14882