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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5204305_5205403_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5204305 - 5205403
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGGCAATTAATT
Flanking Amino Acid:
PETYWVLQAKVNPEKESSLT
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74
0.54
0.9
74.6
36.4
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
50.5
0.09
1.8
68.85
41.6

Associated Gene:

Gene:
TOP3B
Ensembl Gene ID:
ENSAPLG00000005306
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047638
5194199 - 5211210
17012
ENSAPLT00000005558
5196391 - 5211272
14882