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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5208706_5209731_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5208706 - 5209731
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TACAGCTCAACT
Flanking Amino Acid:
CGHVMTLDFIGKYNSWDKVD
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.8
33.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
86.7
0.83
0.7
84.4
30.6
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
50
0.08
2
70.34
46

Associated Gene:

Gene:
TOP3B
Ensembl Gene ID:
ENSAPLG00000005306
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047638
5194199 - 5211210
17012
ENSAPLT00000005558
5196391 - 5211272
14882