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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5280466_5282399_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5280466 - 5282399
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTGTCTCTAACA
Flanking Amino Acid:
HFPSPLSNNQEVSAFGDDGE
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.4
0.48
1
66.2
39.7
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
63.8
0.43
1.7
72.8
39.1

Associated Gene:

Gene:
SDF2L1
Ensembl Gene ID:
ENSAPLG00000005254
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005421
5279976 - 5282782
2807