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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5290525_5299660_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5290525 - 5299660
Intron Length:
9136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
AATCCTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CAAAGCTTAACA
Flanking Amino Acid:
AAADAAKLARRYNIPIGLHA
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
72.8
0.51
1
65
40.4
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
55
0.15
1.9
62.29
43.4

Associated Gene:

Gene:
YDJC
Ensembl Gene ID:
ENSAPLG00000004894
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027584
5289335 - 5303877
14543
ENSAPLT00000005036
5290193 - 5303877
13685