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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5300467_5301209_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5300467 - 5301209

Intron Length:

743

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTACTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTGTTTTTACTT

Flanking Amino Acid:

DGHQHVHVLPEVRNVFAEVL

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

69.9

41.1

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

90.7

0.92

0.7

85.8

27.5

Minor 5ss

29.8

-2.3

3.3

38.5

46.6

Minor BPS

56.4

0.28

1.6

70.08

42.4

Associated Gene:

Gene:

YDJC

Ensembl Gene ID:

ENSAPLG00000004894

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027584

5289335 - 5303877

14543

ENSAPLT00000005036

5290193 - 5303877

13685