Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5301388_5303546_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5301388 - 5303546

Intron Length:

2159

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGACAG

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

TTAGCATTAATA

Flanking Amino Acid:

TVDVFTSHGIRWPDIYIGLS

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.9

71.6

40.1

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

71.7

0.49

0.9

64.6

36.5

Minor 5ss

31.3

-2.1

3.1

38.3

46.6

Minor BPS

63.6

0.42

1.7

73.44

38.4

Associated Gene:

Gene:

YDJC

Ensembl Gene ID:

ENSAPLG00000004894

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027584

5289335 - 5303877

14543

ENSAPLT00000005036

5290193 - 5303877

13685