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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5312504_5316265_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5312504 - 5316265
Intron Length:
3762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TACCTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTGTTACCT
Flanking Amino Acid:
LLTWQGLIVPDNPPYDKGAF
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
78.2
0.63
0.9
72.4
37.3
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
60.3
0.4
2.3
86.99
39.2

Associated Gene:

Gene:
UBE2L3
Ensembl Gene ID:
ENSAPLG00000004797
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031512
5308228 - 5316361
8134
ENSAPLT00000004946
5308811 - 5316427
7617