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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5337170_5356222_R

Intron Information:

Intron Rank:
133421
Intron Class:
major
Intron Phase:
Intron Coordinates:
5337170 - 5356222
Intron Length:
19053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGGCACTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
40.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
81.8
0.72
0.8
80.6
31.5
Minor 5ss
38.3
-1.3
3.1
49.3
46.7
Minor BPS
44.9
-0.3
1.8
60.43
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019042
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019354
5337167 - 5357202
20036