About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_55298_55770_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55298 - 55770
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TGAGGCTTCACG
Flanking Amino Acid:
DGVLLKEIQKDFLLLKYKVV
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
74.1
0.6
1
69
38.9
Major PPT
85.3
0.79
0.7
83.9
24.1
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
45.2
-0.5
2.3
52.58
47.7

Associated Gene:

Gene:
DHX37
Ensembl Gene ID:
ENSAPLG00000009562
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010012
43730 - 60314
16585