Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5554112_5555424_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5554112 - 5555424

Intron Length:

1313

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

AGTGCTGTAACC

Flanking Amino Acid:

EMCVRGYLAVRPYMDAVVSL

Intron Amino Acid Position:

2049

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.9

78.6

37.2

Major BPS

62.2

0.3

1.2

38.7

Major PPT

84.7

0.78

0.7

30.9

Minor 5ss

32.4

-2

3.4

46.7

48.6

Minor BPS

50.8

2.1

40.9

Associated Gene:

Gene:

PI4KA

Ensembl Gene ID:

ENSAPLG00000003021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031384

5550943 - 5610283

59341

ENSAPLT00000003258

5550857 - 5610283

59427