Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5555585_5556228_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5555585 - 5556228

Intron Length:

644

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTCAGTTGT

5'SS Class:

major

3'SS Sequence:

CTTTTGTGCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

AGTTTCTGAAGC

Flanking Amino Acid:

LDKKGHIIHIDFGFMFESSP

Intron Amino Acid Position:

1996

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.3

71.5

41.1

Major BPS

82.1

0.8

71.6

36.4

Major PPT

76.2

0.59

71.5

38.3

Minor 5ss

37.5

-1.4

2.8

47.4

43.2

Minor BPS

55.6

0.16

1.8

66.17

39.1

Associated Gene:

Gene:

PI4KA

Ensembl Gene ID:

ENSAPLG00000003021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031384

5550943 - 5610283

59341

ENSAPLT00000003258

5550857 - 5610283

59427