Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5556779_5557217_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5556779 - 5557217

Intron Length:

439

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCCCTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAG

U12 Branch Point Sequence:

CTTTACAGACCT

Flanking Amino Acid:

PYRVVATAPGCGVIECIPDC

Intron Amino Acid Position:

1914

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

72.4

39.5

Major BPS

58.8

0.22

1.6

Major PPT

0.7

77.6

24.4

Minor 5ss

31.6

-2.1

3.1

31.8

42.6

Minor BPS

45.8

-0.2

2.1

70.95

45.3

Associated Gene:

Gene:

PI4KA

Ensembl Gene ID:

ENSAPLG00000003021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031384

5550943 - 5610283

59341

ENSAPLT00000003258

5550857 - 5610283

59427