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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5565949_5566569_R

Intron Information:

Intron Rank:
37
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5565949 - 5566569
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCCTTTTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATCC
Flanking Amino Acid:
SGMSTISKKSGMSKKTNRGT
Intron Amino Acid Position:
1491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
80.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.8
0.58
1
74.9
33.8
Minor 5ss
77.1
0.91
1.7
84.6
33.2
Minor BPS
64.4
0.43
1.6
73.08
38.7

Associated Gene:

Gene:
PI4KA
Ensembl Gene ID:
ENSAPLG00000003021
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003258
5550857 - 5610283
59427